/* =========================================================================== lipsite webserver: frontend styles Self-contained: system fonts only, no external resources (CSP / offline safe). Design: a calm scientific instrument. One teal accent, used sparingly and reserved for the file drop zones and primary actions so the eye lands on "put your data here". Quiet borders, generous whitespace, clear hierarchy. Desktop-first: a wide form column beside a secondary reference/console rail. Theming: light by default; a real dark theme via prefers-color-scheme; an explicit [data-theme] on overrides the media query in both directions (attribute selectors out-specify the bare :root inside @media). =========================================================================== */ /* ------------------------------- tokens -------------------------------- */ :root { /* Match the ReadTheDocs docs (sphinx_rtd_theme): body in Lato, headings in Roboto Slab. Fonts are inlined via system stacks only, no external/CDN fonts (a CSP blocks them). Lato/Roboto Slab are used when present, otherwise a close system fallback renders. */ --font-sans: "Lato", -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, "Helvetica Neue", Arial, "Noto Sans", sans-serif, "Apple Color Emoji", "Segoe UI Emoji"; --font-head: "Roboto Slab", "Rockwell", "Rockwell Nova", ui-serif, Georgia, "Times New Roman", serif; --font-mono: ui-monospace, SFMono-Regular, "SF Mono", Menlo, Consolas, "Liberation Mono", "Courier New", monospace; /* light palette: cool neutral canvas, one teal accent */ --bg: #f2f5f8; --surface: #ffffff; --surface-2: #eef2f6; --surface-3: #e1e7ee; --border: #e3e8ee; --border-2: #ccd4de; --text: #111820; --text-2: #3d4753; --muted: #64707d; --faint: #8a94a0; --accent: #0d746a; --accent-2: #0a5c54; --accent-ink: #ffffff; --accent-weak: #e2efec; --accent-line: #a7d2cc; --danger: #b42318; --danger-weak: #fcecea; --danger-line: #f0c8c4; --warn: #8a4f06; --warn-weak: #fbf1e1; --warn-line: #ecd7ac; --ok: #167a3b; --ring: 0 0 0 3px color-mix(in srgb, var(--accent) 26%, transparent); --ring-danger: 0 0 0 3px color-mix(in srgb, var(--danger) 24%, transparent); --shadow-1: 0 1px 2px rgba(17, 30, 44, .05), 0 1px 3px rgba(17, 30, 44, .04); --shadow-2: 0 10px 30px -10px rgba(17, 30, 44, .18), 0 2px 8px -4px rgba(17, 30, 44, .08); --r-sm: 8px; --r: 12px; --r-lg: 16px; --shell: 1200px; } /* dark tokens, shared by media-query auto-dark and explicit override */ @media (prefers-color-scheme: dark) { :root:not([data-theme="light"]) { --bg: #0a0e13; --surface: #141b24; --surface-2: #1c2530; --surface-3: #26313d; --border: #253039; --border-2: #39434f; --text: #e9eef4; --text-2: #c2ccd7; --muted: #93a0ad; --faint: #6b7681; --accent: #34c9ba; --accent-2: #57dccd; --accent-ink: #042220; --accent-weak: rgba(52, 201, 186, .13); --accent-line: rgba(52, 201, 186, .34); --danger: #ff958e; --danger-weak: rgba(255, 149, 142, .13); --danger-line: rgba(255, 149, 142, .34); --warn: #f0c064; --warn-weak: rgba(240, 192, 100, .12); --warn-line: rgba(240, 192, 100, .30); --ok: #5bd583; --shadow-1: 0 1px 2px rgba(0, 0, 0, .4); --shadow-2: 0 14px 36px -12px rgba(0, 0, 0, .6); } } /* explicit override wins over the media query above */ :root[data-theme="dark"] { --bg: #0a0e13; --surface: #141b24; --surface-2: #1c2530; --surface-3: #26313d; --border: #253039; --border-2: #39434f; --text: #e9eef4; --text-2: #c2ccd7; --muted: #93a0ad; --faint: #6b7681; --accent: #34c9ba; --accent-2: #57dccd; --accent-ink: #042220; --accent-weak: rgba(52, 201, 186, .13); --accent-line: rgba(52, 201, 186, .34); --danger: #ff958e; --danger-weak: rgba(255, 149, 142, .13); --danger-line: rgba(255, 149, 142, .34); --warn: #f0c064; --warn-weak: rgba(240, 192, 100, .12); --warn-line: rgba(240, 192, 100, .30); --ok: #5bd583; --shadow-1: 0 1px 2px rgba(0, 0, 0, .4); --shadow-2: 0 14px 36px -12px rgba(0, 0, 0, .6); } /* -------------------------------- base --------------------------------- */ *, *::before, *::after { box-sizing: border-box; } /* 17px root: a comfortable reading base for a desktop tool. */ html { font-size: 106.25%; -webkit-text-size-adjust: 100%; } /* The `hidden` attribute must always win: several toggled elements carry a class/id that sets `display` (e.g. .btn, #job-result, .steppers), which would otherwise out-specify the UA [hidden] rule and leak through while hidden. */ [hidden] { display: none !important; } body { margin: 0; min-height: 100vh; display: flex; flex-direction: column; font-family: var(--font-sans); font-size: 1rem; /* 17px */ line-height: 1.6; color: var(--text); background: var(--bg); -webkit-font-smoothing: antialiased; text-rendering: optimizeLegibility; } h1, h2, h3 { margin: 0; line-height: 1.18; letter-spacing: -0.01em; font-family: var(--font-head); } /* Roboto-Slab-style headings on the major titles, echoing the docs. Small uppercase eyebrows/labels stay in the body sans. */ .intro__title, .panel__title, .how__t, .sub__title { font-family: var(--font-head); } p { margin: 0; } a { color: var(--accent); text-decoration: none; } a:hover { text-decoration: underline; } :focus-visible { outline: none; } a:focus-visible { outline: 2px solid var(--accent); outline-offset: 2px; border-radius: 3px; } .mono { font-family: var(--font-mono); font-size: 0.92em; letter-spacing: -0.01em; } .shell { width: 100%; max-width: var(--shell); margin-inline: auto; padding-inline: 32px; } .skip-link { position: absolute; left: -999px; top: 0; z-index: 100; background: var(--surface); color: var(--text); padding: 10px 16px; border-radius: 0 0 var(--r-sm) 0; box-shadow: var(--shadow-2); } .skip-link:focus { left: 0; } /* ------------------------------- header -------------------------------- */ .masthead { position: sticky; top: 0; z-index: 30; border-bottom: 1px solid var(--border); background: color-mix(in srgb, var(--bg) 85%, transparent); backdrop-filter: saturate(150%) blur(10px); } .masthead__inner { display: flex; align-items: center; justify-content: space-between; gap: 16px; min-height: 64px; } .brand { display: inline-flex; align-items: center; gap: 12px; color: var(--text); } .brand:hover { text-decoration: none; } .brand__mark { color: var(--accent); display: inline-flex; } .brand__lockup { display: flex; flex-direction: column; line-height: 1.1; } /* LipidSite wordmark lockup: bold "Lip"+"Site" (spells the package), muted "id". */ .brand__name { font-family: var(--font-sans); font-size: 1.28rem; font-weight: 800; letter-spacing: -0.01em; color: var(--text); } .brand__name .wm-b { font-weight: 800; color: var(--text); } .brand__name .wm-m { font-weight: 400; color: var(--muted); } .brand__tag { font-size: 0.75rem; color: var(--muted); margin-top: 1px; } @media (max-width: 640px) { .brand__tag { display: none; } } .masthead__end { display: flex; align-items: center; gap: 14px; } .masthead__link { font-size: 0.92rem; font-weight: 550; color: var(--muted); } .masthead__link:hover { color: var(--text); } @media (max-width: 520px) { .masthead__link { display: none; } } .theme-toggle { flex: none; width: 38px; height: 38px; display: grid; place-items: center; cursor: pointer; color: var(--muted); background: var(--surface); border: 1px solid var(--border-2); border-radius: var(--r-sm); transition: color .15s, border-color .15s; } .theme-toggle:hover { color: var(--text); border-color: var(--muted); } .theme-toggle:focus-visible { box-shadow: var(--ring); border-color: var(--accent); } .theme-toggle .t-sun { display: none; } .theme-toggle .t-moon { display: block; } @media (prefers-color-scheme: dark) { :root:not([data-theme="light"]) .theme-toggle .t-sun { display: block; } :root:not([data-theme="light"]) .theme-toggle .t-moon { display: none; } } :root[data-theme="dark"] .theme-toggle .t-sun { display: block; } :root[data-theme="dark"] .theme-toggle .t-moon { display: none; } :root[data-theme="light"] .theme-toggle .t-sun { display: none; } :root[data-theme="light"] .theme-toggle .t-moon { display: block; } /* -------------------------------- intro -------------------------------- */ .intro { padding: 46px 0 30px; background: radial-gradient(1100px 380px at 8% -40%, var(--accent-weak), transparent 62%); } .intro__grid { display: grid; grid-template-columns: minmax(0, 1fr) minmax(300px, 380px); gap: 44px; align-items: center; } .intro__lead { min-width: 0; } .intro__kicker { font-size: 0.8rem; font-weight: 650; color: var(--accent); margin-bottom: 12px; } .intro__title { font-size: clamp(1.9rem, 2.8vw, 2.5rem); font-weight: 720; max-width: 18ch; margin-bottom: 14px; } .intro__lede { max-width: 60ch; color: var(--text-2); font-size: 1.1rem; line-height: 1.55; } /* the input requirement, surfaced prominently, top of page */ .reqcard { background: var(--accent-weak); border: 1px solid var(--accent-line); border-radius: var(--r-lg); padding: 22px 24px; } .reqcard__title { font-size: 0.74rem; font-weight: 700; letter-spacing: 0.08em; text-transform: uppercase; color: var(--accent-2); margin-bottom: 14px; } .reqcard__formats { list-style: none; margin: 0 0 14px; padding: 0 0 14px; border-bottom: 1px solid var(--accent-line); display: grid; gap: 9px; } .reqcard__formats li { display: flex; align-items: center; justify-content: space-between; gap: 12px; } .reqcard__k { font-size: 0.96rem; font-weight: 600; color: var(--text); } .reqcard__v { font-size: 1rem; font-weight: 700; color: var(--accent-2); } .reqcard__note { font-size: 0.92rem; line-height: 1.55; color: var(--text-2); } .reqcard__note strong { color: var(--text); font-weight: 660; } @media (max-width: 900px) { .intro__grid { grid-template-columns: 1fr; gap: 26px; } } /* ----------------------------- how it works ---------------------------- */ .how { padding: 6px 0 40px; } .how__list { list-style: none; margin: 0; padding: 0; display: grid; grid-template-columns: repeat(4, 1fr); gap: 22px; } .how__item { display: flex; align-items: flex-start; gap: 13px; } .how__n { flex: none; width: 30px; height: 30px; border-radius: 50%; display: grid; place-items: center; font-size: 0.92rem; font-weight: 700; font-variant-numeric: tabular-nums; color: var(--accent); background: var(--accent-weak); border: 1px solid var(--accent-line); } .how__body { min-width: 0; } .how__t { font-size: 1rem; font-weight: 650; margin-bottom: 4px; } .how__d { font-size: 0.9rem; color: var(--muted); line-height: 1.5; } @media (max-width: 760px) { .how__list { grid-template-columns: 1fr 1fr; gap: 20px 26px; } } @media (max-width: 520px) { .how__list { grid-template-columns: 1fr; } } /* ------------------------------ workbench ------------------------------ */ .workbench { display: grid; grid-template-columns: minmax(0, 1fr) 340px; gap: 40px; align-items: start; padding-top: 8px; padding-bottom: 72px; } .stack { display: flex; flex-direction: column; gap: 22px; min-width: 0; } .side { min-width: 0; } @media (max-width: 1080px) { .workbench { grid-template-columns: 1fr; gap: 24px; } .side { order: 2; } } /* ------------------------------- panels -------------------------------- */ .panel { background: var(--surface); border: 1px solid var(--border); border-radius: var(--r-lg); padding: 28px 30px; box-shadow: var(--shadow-1); } /* the data step reads as the primary input via a faint accent frame */ .panel--primary { border-color: var(--accent-line); } .panel--flush { padding: 0; overflow: hidden; } .panel__head { display: flex; align-items: flex-start; gap: 15px; margin-bottom: 22px; } .panel__heads { min-width: 0; } .panel__title { display: block; font-size: 1.24rem; font-weight: 660; } .panel__sub { margin-top: 5px; font-size: 0.95rem; color: var(--muted); line-height: 1.5; max-width: 64ch; } .step { flex: none; width: 34px; height: 34px; border-radius: 10px; margin-top: 1px; display: grid; place-items: center; font-size: 1rem; font-weight: 700; font-variant-numeric: tabular-nums; color: var(--accent-ink); background: var(--accent); } .step--ghost { color: var(--accent); background: var(--accent-weak); border: 1px solid var(--accent-line); } /* ------------------------------- fields -------------------------------- */ .field { padding-block: 22px; border-top: 1px solid var(--border); } .field--top { border-top: 0; padding-top: 4px; } .field--bare { padding: 0; border-top: 0; } .lbl { display: block; font-weight: 630; font-size: 1rem; margin-bottom: 12px; } .lbl--sm { font-size: 0.9rem; font-weight: 600; margin-bottom: 8px; } .lbl-row { display: flex; align-items: center; justify-content: space-between; gap: 12px; margin-bottom: 10px; } .lbl-row .lbl { margin-bottom: 0; } .hint { color: var(--muted); font-size: 0.88rem; margin-top: 10px; line-height: 1.5; } .hint--tight { margin-top: 0; margin-bottom: 14px; } .field--bare .hint { margin-top: 8px; } /* required / optional pills next to a label */ .req, .opt { display: inline-block; vertical-align: 0.08em; margin-left: 8px; font-size: 0.64rem; font-weight: 700; letter-spacing: 0.05em; text-transform: uppercase; padding: 2px 8px; border-radius: 999px; font-family: var(--font-sans); } .req { color: var(--danger); background: var(--danger-weak); border: 1px solid var(--danger-line); } .opt { color: var(--muted); background: var(--surface-2); border: 1px solid var(--border-2); } /* two-column settings row (force field | cutoff) */ .cols2 { display: grid; grid-template-columns: 1fr 1fr; gap: 0 40px; align-items: start; } @media (max-width: 760px) { .cols2 { grid-template-columns: 1fr; gap: 0; } } /* three-up number grid (detection) */ .grid3 { display: grid; grid-template-columns: repeat(3, 1fr); gap: 20px; } @media (max-width: 680px) { .grid3 { grid-template-columns: 1fr 1fr; } } @media (max-width: 440px) { .grid3 { grid-template-columns: 1fr; } } /* inline "i" tooltip */ .tip { display: inline-grid; place-items: center; width: 17px; height: 17px; margin-left: 5px; border-radius: 50%; font-size: 0.68rem; font-weight: 700; font-style: normal; cursor: help; color: var(--muted); background: var(--surface-2); border: 1px solid var(--border-2); position: relative; vertical-align: 0.05em; font-family: var(--font-mono); } .tip:hover, .tip:focus-visible { color: var(--accent); border-color: var(--accent-line); background: var(--accent-weak); } .tip::after { content: attr(data-tip); position: absolute; bottom: calc(100% + 9px); left: 50%; transform: translateX(-50%); width: max-content; max-width: 240px; z-index: 40; background: var(--text); color: var(--surface); font-size: 0.8rem; font-weight: 400; line-height: 1.45; font-family: var(--font-sans); text-align: left; letter-spacing: normal; padding: 8px 11px; border-radius: 8px; box-shadow: var(--shadow-2); opacity: 0; visibility: hidden; transition: opacity .14s; pointer-events: none; } .tip:hover::after, .tip:focus-visible::after { opacity: 1; visibility: visible; } /* --------------------------- comparison mode --------------------------- */ .mode { display: flex; align-items: center; gap: 16px; margin-bottom: 12px; } .mode__label { flex: none; font-weight: 620; font-size: 0.98rem; color: var(--text-2); } .mode .segmented { flex: 1; } @media (max-width: 520px) { .mode { flex-direction: column; align-items: stretch; gap: 8px; } } .note { font-size: 0.92rem; color: var(--text-2); line-height: 1.55; padding: 12px 15px; margin-bottom: 18px; background: var(--surface-2); border: 1px solid var(--border); border-left: 3px solid var(--accent-line); border-radius: var(--r-sm); } .note strong { color: var(--text); font-weight: 650; } /* ------------------------------ segmented ------------------------------ */ .segmented { display: inline-flex; flex-wrap: wrap; gap: 4px; padding: 4px; background: var(--surface-2); border: 1px solid var(--border); border-radius: 11px; } .segmented--fill { display: flex; width: 100%; } .segmented--fill .segmented__opt { flex: 1 1 0; } .segmented__opt { position: relative; cursor: pointer; } .segmented__opt input { position: absolute; opacity: 0; inset: 0; cursor: pointer; margin: 0; } .segmented__opt span { display: block; text-align: center; padding: 9px 16px; border-radius: 8px; font-size: 0.94rem; font-weight: 550; color: var(--text-2); transition: background .12s, color .12s; white-space: nowrap; } .segmented__opt:hover span { color: var(--text); } .segmented__opt input:checked + span { background: var(--surface); color: var(--accent); box-shadow: var(--shadow-1); font-weight: 650; } .segmented__opt input:focus-visible + span { box-shadow: var(--ring); } /* ==================== proteins (multi-receptor cards) =================== */ .receptors { display: flex; flex-direction: column; gap: 16px; margin-top: 2px; } .receptor { background: var(--surface); border: 1px solid var(--border-2); border-radius: var(--r); overflow: hidden; } .receptor.is-error { border-color: var(--danger); } .receptor__head { display: flex; align-items: flex-end; gap: 12px; flex-wrap: wrap; padding: 15px 16px; background: var(--surface-2); border-bottom: 1px solid var(--border); } .receptor__idx { flex: none; align-self: center; display: grid; place-items: center; min-width: 32px; height: 32px; padding: 0 8px; font-size: 0.8rem; font-weight: 700; color: var(--accent-ink); background: var(--accent); border-radius: 8px; } .receptor__field { display: flex; flex-direction: column; gap: 6px; } .receptor__field--name { flex: 1 1 200px; min-width: 0; } .receptor__field--off { flex: 0 0 150px; } .receptor__flabel { font-size: 0.8rem; font-weight: 600; color: var(--muted); } /* clarifies that the receptor name is a label (output folder / config key), not a selection */ .receptor__namehint { flex: 0 0 100%; margin: 8px 0 0; font-size: 0.8rem; line-height: 1.45; color: var(--muted); } .receptor__del { flex: none; align-self: center; width: 34px; height: 34px; border-radius: 8px; cursor: pointer; display: grid; place-items: center; color: var(--muted); background: var(--surface); border: 1px solid var(--border-2); transition: all .13s; } .receptor__del:hover { color: var(--danger); border-color: var(--danger-line); background: var(--danger-weak); } .receptor__del:focus-visible { box-shadow: var(--ring); border-color: var(--accent); } .receptor--solo .receptor__del { display: none; } .receptor__fasta { padding: 15px 16px 0; } .receptor__fastalabel { display: block; margin-bottom: 8px; } .receptor__fasta .select { max-width: 420px; } .receptor__states { padding: 16px; display: flex; flex-direction: column; gap: 16px; } /* per-protein advanced disclosure (chain + per-file offsets) */ .receptor__adv { border-top: 1px solid var(--border); } .receptor__advsum { list-style: none; cursor: pointer; padding: 12px 16px; font-size: 0.88rem; font-weight: 600; color: var(--accent); display: inline-flex; align-items: center; gap: 7px; user-select: none; } .receptor__advsum::-webkit-details-marker { display: none; } .receptor__advsum::before { content: ""; width: 7px; height: 7px; border-right: 2px solid currentColor; border-bottom: 2px solid currentColor; transform: rotate(-45deg); transition: transform .18s; } .receptor__adv[open] .receptor__advsum::before { transform: rotate(45deg); } .receptor__advsum:focus-visible { box-shadow: var(--ring); border-radius: var(--r-sm); } .receptor__advbody { padding: 2px 16px 18px; display: flex; flex-direction: column; gap: 16px; } /* add-protein button */ .addbtn { margin-top: 16px; display: inline-flex; align-items: center; gap: 8px; font: inherit; font-size: 0.95rem; font-weight: 620; cursor: pointer; color: var(--accent); background: var(--accent-weak); border: 1px solid var(--accent-line); border-radius: var(--r-sm); padding: 11px 18px; transition: background .13s, border-color .13s; } .addbtn:hover { background: color-mix(in srgb, var(--accent) 15%, transparent); border-color: var(--accent); } .addbtn:focus-visible { box-shadow: var(--ring); border-color: var(--accent); } .addbtn svg { flex: none; } .upload-limit { margin-top: 14px; font-size: 0.88rem; color: var(--muted); } /* optional shared FASTA, clearly secondary */ .optional { margin-top: 24px; padding-top: 22px; border-top: 1px solid var(--border); } .optional__head { display: flex; align-items: center; gap: 4px; margin-bottom: 4px; } .optional__title { font-weight: 640; font-size: 1.02rem; } /* ==================== states (single vs active/inactive) =============== */ /* general (single condition) is the sole group, minimal chrome. active / inactive read as two distinct, colour-tagged groups to compare. */ .stategroup__head { display: flex; align-items: center; gap: 10px; margin-bottom: 12px; } .stategroup__name { font-weight: 640; font-size: 1rem; letter-spacing: -0.01em; } .stategroup__count { font-family: var(--font-mono); font-size: 0.72rem; font-weight: 700; color: var(--muted); background: var(--surface-2); border: 1px solid var(--border-2); border-radius: 999px; padding: 2px 9px; } .stategroup--filled .stategroup__count { color: var(--accent); background: var(--accent-weak); border-color: var(--accent-line); } .stategroup__body { min-width: 0; } .repeats { display: flex; flex-direction: column; gap: 12px; } .repeats:empty { display: none; } .stategroup__empty { font-size: 0.88rem; color: var(--faint); padding: 2px 0 10px; } .stategroup[data-state="general"] .stategroup__name { font-size: 0.74rem; text-transform: uppercase; letter-spacing: 0.08em; font-weight: 700; color: var(--muted); } .stategroup[data-state="active"], .stategroup[data-state="inactive"] { border: 1px solid var(--border); border-left-width: 3px; border-radius: var(--r-sm); padding: 14px; } .stategroup[data-state="active"] { border-left-color: var(--ok); } .stategroup[data-state="inactive"] { border-left-color: var(--faint); } /* add-repeat button (built by app.js) */ .addrepeat { margin-top: 12px; display: inline-flex; align-items: center; gap: 7px; font: inherit; font-size: 0.88rem; font-weight: 600; cursor: pointer; color: var(--accent); background: transparent; border: 1.5px dashed var(--accent-line); border-radius: var(--r-sm); padding: 9px 15px; transition: background .13s, border-color .13s; } .addrepeat:hover { background: var(--accent-weak); border-color: var(--accent); } .addrepeat:focus-visible { box-shadow: var(--ring); border-color: var(--accent); } .addrepeat svg { flex: none; } /* a repeat row: [tag] [ topology | trajectory ] [offset?] [delete] */ .repeat { display: grid; grid-template-columns: auto minmax(0, 1fr) auto; gap: 10px; align-items: center; } .repeat__tag { flex: none; align-self: stretch; display: grid; place-items: center; min-width: 30px; padding: 0 5px; font-size: 0.72rem; font-weight: 700; color: var(--accent); background: var(--accent-weak); border: 1px solid var(--accent-line); border-radius: 7px; } .pair { display: grid; grid-template-columns: 1fr 1fr; gap: 10px; min-width: 0; } .repeat__off { display: none; width: 100%; } .repeat__del { flex: none; width: 34px; height: 34px; border-radius: 8px; cursor: pointer; display: grid; place-items: center; color: var(--muted); background: var(--surface-2); border: 1px solid var(--border-2); transition: all .13s; } .repeat__del:hover { color: var(--danger); border-color: var(--danger-line); background: var(--danger-weak); } .repeat__del:focus-visible { box-shadow: var(--ring); border-color: var(--accent); } /* per-file offset column, revealed by the per-protein toggle */ .receptor.show-offsets .repeat { grid-template-columns: auto minmax(0, 1fr) 88px auto; } .receptor.show-offsets .repeat__off { display: block; } /* ------------------------------- file cell ----------------------------- */ /* the primary action: prominent drop targets, the only strongly-styled control */ .filecell { position: relative; display: flex; align-items: center; gap: 12px; min-width: 0; padding: 13px 14px; min-height: 66px; cursor: pointer; background: var(--surface-2); border: 1.5px dashed var(--border-2); border-radius: var(--r-sm); transition: border-color .14s, background .14s, box-shadow .14s; } .filecell:hover { border-color: var(--accent); background: var(--accent-weak); } .filecell:focus-visible { box-shadow: var(--ring); border-color: var(--accent); } .filecell.is-drag { border-color: var(--accent); background: var(--accent-weak); border-style: solid; } .filecell.has-file { border-style: solid; border-color: var(--accent-line); background: var(--surface); cursor: default; } .filecell.is-error { border-color: var(--danger); border-style: solid; background: var(--danger-weak); } .filecell__icon { flex: none; color: var(--accent); } .filecell__body { min-width: 0; display: flex; flex-direction: column; gap: 2px; } .filecell__title { font-size: 0.95rem; font-weight: 620; color: var(--text); } .filecell__hint { font-size: 0.78rem; color: var(--faint); } .filecell.has-file .filecell__icon, .filecell.has-file .filecell__body { display: none; } .filecell__file { display: flex; align-items: center; gap: 11px; width: 100%; min-width: 0; } .filecell__badge { flex: none; width: 34px; height: 34px; border-radius: 8px; display: grid; place-items: center; background: var(--accent-weak); color: var(--accent); font-size: 0.58rem; font-weight: 700; } .filecell__meta { min-width: 0; flex: 1; display: flex; flex-direction: column; gap: 1px; } .filecell__name { font-weight: 600; font-size: 0.9rem; color: var(--text); white-space: nowrap; overflow: hidden; text-overflow: ellipsis; } .filecell__size { font-size: 0.78rem; color: var(--muted); } .filecell__x { flex: none; width: 28px; height: 28px; border-radius: 7px; cursor: pointer; border: 1px solid var(--border-2); background: var(--surface-2); color: var(--muted); font-size: 1.15rem; line-height: 1; display: grid; place-items: center; transition: all .13s; } .filecell__x:hover { color: var(--danger); border-color: var(--danger-line); background: var(--danger-weak); } .filecell__x:focus-visible { box-shadow: var(--ring); border-color: var(--accent); } .filecell--wide { min-height: 60px; } @media (max-width: 620px) { .pair { grid-template-columns: 1fr; } .receptor.show-offsets .repeat { grid-template-columns: auto minmax(0, 1fr) auto; } .receptor.show-offsets .repeat__off { grid-column: 1 / -1; width: 100%; } } /* ----------------------- disclosure + code block ----------------------- */ .disclose { margin-top: 22px; padding-top: 18px; border-top: 1px solid var(--border); } .disclose__sum { display: inline-flex; align-items: center; gap: 7px; cursor: pointer; list-style: none; font-size: 0.9rem; font-weight: 600; color: var(--accent); width: max-content; } .disclose__sum::-webkit-details-marker { display: none; } .disclose__sum::before { content: ""; width: 7px; height: 7px; border-right: 2px solid currentColor; border-bottom: 2px solid currentColor; transform: rotate(-45deg); transition: transform .18s; } .disclose[open] .disclose__sum::before { transform: rotate(45deg); } .disclose__sum:focus-visible { box-shadow: var(--ring); border-radius: var(--r-sm); } .disclose__body { margin-top: 12px; } .code { position: relative; margin-top: 12px; background: var(--surface-2); border: 1px solid var(--border); border-radius: var(--r-sm); overflow: hidden; } :root[data-theme="dark"] .code { background: #0a0f16; } @media (prefers-color-scheme: dark) { :root:not([data-theme="light"]) .code { background: #0a0f16; } } .code pre { margin: 0; padding: 14px 16px; padding-right: 70px; white-space: pre-wrap; overflow-wrap: break-word; font-family: var(--font-mono); font-size: 0.82rem; line-height: 1.7; color: var(--text-2); } .code__line { display: block; } .code__copy { position: absolute; top: 8px; right: 8px; font: inherit; font-size: 0.76rem; font-weight: 600; color: var(--muted); background: var(--surface); border: 1px solid var(--border-2); border-radius: 6px; padding: 4px 10px; cursor: pointer; } .code__copy:hover { color: var(--text); border-color: var(--muted); } .code__copy.is-copied { color: var(--ok); border-color: var(--accent-line); } .code__copy:focus-visible { box-shadow: var(--ring); border-color: var(--accent); } /* ------------------------------- chips --------------------------------- */ .chips { display: flex; flex-wrap: wrap; gap: 8px; margin-bottom: 12px; } .chips button { font: inherit; font-size: 0.84rem; font-weight: 550; cursor: pointer; color: var(--text-2); background: var(--surface-2); border: 1px solid var(--border-2); border-radius: 999px; padding: 5px 14px; transition: all .12s; font-family: var(--font-mono); } .chips button:hover { border-color: var(--accent-line); color: var(--text); } .chips button:focus-visible { box-shadow: var(--ring); border-color: var(--accent); } .chips button.is-on { color: var(--accent); background: var(--accent-weak); border-color: var(--accent-line); } /* ------------------------------- tag box ------------------------------- */ .tagbox { display: flex; flex-wrap: wrap; gap: 8px; align-items: center; padding: 9px; min-height: 50px; background: var(--surface); border: 1px solid var(--border-2); border-radius: 11px; transition: border-color .15s, box-shadow .15s; } .tagbox:focus-within { border-color: var(--accent); box-shadow: var(--ring); } .tag { display: inline-flex; align-items: center; gap: 6px; font-family: var(--font-mono); font-size: 0.84rem; font-weight: 600; color: var(--accent); background: var(--accent-weak); border: 1px solid var(--accent-line); border-radius: 7px; padding: 4px 6px 4px 11px; } .tag button { border: 0; background: transparent; color: inherit; cursor: pointer; font-size: 1.05rem; line-height: 1; padding: 0 3px; opacity: .7; } .tag button:hover { opacity: 1; } .tagbox__input { flex: 1; min-width: 150px; border: 0; background: transparent; outline: none; font: inherit; font-size: 0.96rem; color: var(--text); padding: 4px 6px; } .tagbox__input::placeholder { color: var(--faint); } /* -------------------------------- range -------------------------------- */ .valbadge { font-weight: 700; color: var(--accent); background: var(--accent-weak); border: 1px solid var(--accent-line); border-radius: 7px; padding: 3px 12px; font-size: 0.92rem; } .range { -webkit-appearance: none; appearance: none; width: 100%; height: 6px; margin: 8px 0 2px; border-radius: 999px; cursor: pointer; background: linear-gradient(var(--accent), var(--accent)) no-repeat, var(--surface-3); background-size: 40% 100%; } .range::-webkit-slider-thumb { -webkit-appearance: none; appearance: none; width: 20px; height: 20px; border-radius: 50%; background: var(--surface); border: 2px solid var(--accent); box-shadow: var(--shadow-1); cursor: pointer; } .range::-moz-range-thumb { width: 20px; height: 20px; border-radius: 50%; background: var(--surface); border: 2px solid var(--accent); box-shadow: var(--shadow-1); cursor: pointer; } .range:focus-visible::-webkit-slider-thumb { box-shadow: var(--ring); } .range:focus-visible::-moz-range-thumb { box-shadow: var(--ring); } .range__scale { display: flex; justify-content: space-between; margin-top: 9px; font-size: 0.76rem; color: var(--faint); } /* -------------------------- inputs / selects --------------------------- */ .input { width: 100%; font: inherit; font-size: 0.98rem; color: var(--text); background: var(--surface); border: 1px solid var(--border-2); border-radius: 9px; padding: 11px 13px; transition: border-color .15s, box-shadow .15s; } .input::placeholder { color: var(--faint); } .input:focus { outline: none; border-color: var(--accent); box-shadow: var(--ring); } .input.is-error { border-color: var(--danger); box-shadow: var(--ring-danger); } .input--num { max-width: 100%; } .input-unit { position: relative; display: flex; align-items: center; } .input-unit .input { padding-right: 62px; } .input-unit__u { position: absolute; right: 13px; font-size: 0.82rem; color: var(--faint); pointer-events: none; } /* injected per-protein FASTA record picker */ .select { position: relative; } .select::after { content: ""; position: absolute; right: 14px; top: 50%; width: 8px; height: 8px; border-right: 2px solid var(--muted); border-bottom: 2px solid var(--muted); transform: translateY(-70%) rotate(45deg); pointer-events: none; } .select select { width: 100%; font: inherit; font-size: 0.96rem; color: var(--text); background: var(--surface); border: 1px solid var(--border-2); border-radius: 9px; padding: 10px 38px 10px 13px; cursor: pointer; -webkit-appearance: none; appearance: none; } .select select:focus { outline: none; border-color: var(--accent); box-shadow: var(--ring); } /* custom selection reveal + live preview */ .reveal { margin-top: 14px; } .preview { display: flex; align-items: center; gap: 10px; flex-wrap: wrap; margin-top: 14px; padding: 11px 14px; border-radius: var(--r-sm); background: var(--surface-2); border: 1px solid var(--border); } .preview__tag { flex: none; font-size: 0.66rem; font-weight: 700; letter-spacing: 0.08em; text-transform: uppercase; color: var(--muted); } .preview code { font-family: var(--font-mono); font-size: 0.86rem; color: var(--accent); overflow-wrap: anywhere; } /* ------------------------------- switch -------------------------------- */ .switch { display: flex; align-items: flex-start; gap: 14px; cursor: pointer; } .switch input { position: absolute; opacity: 0; width: 0; height: 0; } .switch__track { flex: none; margin-top: 2px; width: 46px; height: 26px; border-radius: 999px; background: var(--surface-3); border: 1px solid var(--border-2); position: relative; transition: background .16s, border-color .16s; } .switch__thumb { position: absolute; top: 2px; left: 2px; width: 20px; height: 20px; border-radius: 50%; background: var(--surface); box-shadow: var(--shadow-1); transition: transform .16s; } .switch input:checked + .switch__track { background: var(--accent); border-color: var(--accent); } .switch input:checked + .switch__track .switch__thumb { transform: translateX(20px); } .switch input:focus-visible + .switch__track { box-shadow: var(--ring); } .switch__text strong { display: block; font-size: 0.98rem; font-weight: 640; } .switch__text span { font-size: 0.86rem; color: var(--muted); line-height: 1.5; } .switch__text > span { display: block; margin-top: 4px; } .switch--sm .switch__track { width: 40px; height: 23px; } .switch--sm .switch__thumb { width: 17px; height: 17px; } .switch--sm input:checked + .switch__track .switch__thumb { transform: translateX(17px); } .switch--sm .switch__text strong { font-size: 0.92rem; } /* ------------------------------ advanced ------------------------------- */ .adv__summary { list-style: none; cursor: pointer; padding: 26px 30px; user-select: none; display: flex; align-items: center; gap: 15px; } .adv__summary::-webkit-details-marker { display: none; } .adv__summary-text { flex: 1; min-width: 0; display: flex; flex-direction: column; gap: 4px; } .adv__summary-text .panel__title { font-size: 1.2rem; } .adv__summary-text .panel__sub { margin-top: 0; } .adv__chev { color: var(--muted); transition: transform .18s; flex: none; } .adv[open] .adv__chev { transform: rotate(180deg); } .adv__summary:hover .panel__title { color: var(--accent); } .adv__summary:focus-visible { box-shadow: var(--ring); border-radius: var(--r-lg); } .adv__body { padding: 0 30px 28px; border-top: 1px solid var(--border); } /* labelled subgroup */ .sub { min-width: 0; margin: 0; padding: 24px 0; border: 0; border-top: 1px solid var(--border); } .sub:first-of-type { border-top: 0; padding-top: 4px; } .sub--last { padding-bottom: 4px; } .sub__title { display: block; width: 100%; padding: 0; font-weight: 650; font-size: 1.02rem; color: var(--text); margin-bottom: 4px; } .steppers { display: grid; grid-template-columns: 1fr 1fr; gap: 18px; margin-top: 18px; max-width: 360px; } @media (max-width: 440px) { .steppers { grid-template-columns: 1fr; } } /* ------------------------------- callouts ------------------------------ */ .callout { display: flex; align-items: flex-start; gap: 10px; padding: 12px 14px; border-radius: var(--r-sm); font-size: 0.9rem; line-height: 1.5; } .callout svg { flex: none; margin-top: 2px; } .callout--warn { margin-top: 14px; color: var(--warn); background: var(--warn-weak); border: 1px solid var(--warn-line); } .callout--error { display: block; color: var(--danger); background: var(--danger-weak); border: 1px solid var(--danger-line); } /* ------------------------------- buttons ------------------------------- */ .btn { display: inline-flex; align-items: center; justify-content: center; gap: 9px; font: inherit; font-weight: 630; cursor: pointer; border-radius: 10px; padding: 12px 22px; border: 1px solid transparent; transition: background .15s, border-color .15s, color .15s, opacity .15s; } .btn--full { width: 100%; } .btn--primary { background: var(--accent); color: var(--accent-ink); box-shadow: var(--shadow-1); } .btn--primary:hover { background: var(--accent-2); text-decoration: none; } .btn--primary:focus-visible { box-shadow: var(--ring); } .btn--primary:disabled { opacity: .6; cursor: default; } .btn--ghost { background: var(--surface); color: var(--text-2); border-color: var(--border-2); } .btn--ghost:hover { color: var(--text); border-color: var(--muted); text-decoration: none; } .btn--ghost:focus-visible { box-shadow: var(--ring); border-color: var(--accent); } .btn--sm { padding: 8px 14px; font-size: 0.88rem; border-radius: 8px; gap: 6px; } .btn--run { width: 100%; padding: 16px 26px; font-size: 1.06rem; } .btn__spinner { display: none; animation: spin .8s linear infinite; } .btn.is-loading .btn__spinner { display: inline; } .btn.is-loading .btn__arrow { display: none; } .btn.is-loading { pointer-events: none; } .btn.is-copied { color: var(--ok); border-color: var(--accent-line); } @keyframes spin { to { transform: rotate(360deg); } } /* ----------------------------- form error ------------------------------ */ .form-error { background: var(--danger-weak); border: 1px solid var(--danger-line); color: var(--danger); font-size: 0.94rem; font-weight: 500; border-radius: var(--r); padding: 14px 17px; } /* ---------------------------- side / rail ------------------------------ */ .panel--side { padding: 26px; } @media (min-width: 1081px) { .panel--side { position: sticky; top: 84px; } } .eyebrow { font-size: 0.74rem; font-weight: 700; letter-spacing: 0.1em; text-transform: uppercase; color: var(--faint); } .eyebrow--spaced { margin-top: 24px; padding-top: 20px; border-top: 1px solid var(--border); } .ticks { list-style: none; margin: 16px 0 0; padding: 0; display: flex; flex-direction: column; gap: 12px; } .ticks li { position: relative; padding-left: 26px; font-size: 0.93rem; color: var(--text-2); line-height: 1.45; } .ticks li::before { content: ""; position: absolute; left: 3px; top: 5px; width: 11px; height: 6px; border-left: 2px solid var(--accent); border-bottom: 2px solid var(--accent); transform: rotate(-45deg); } .ticks strong { color: var(--text); font-weight: 630; } .spec { margin: 22px 0 0; padding-top: 20px; border-top: 1px solid var(--border); display: grid; gap: 11px; } .spec > div { display: flex; align-items: center; justify-content: space-between; gap: 12px; } .spec dt { font-size: 0.9rem; color: var(--muted); } .spec dd { margin: 0; font-size: 0.9rem; color: var(--text-2); } .notes { list-style: none; margin: 13px 0 0; padding: 0; display: flex; flex-direction: column; gap: 10px; } .notes li { position: relative; padding-left: 16px; font-size: 0.86rem; color: var(--muted); line-height: 1.5; } .notes li::before { content: ""; position: absolute; left: 0; top: 9px; width: 5px; height: 5px; border-radius: 50%; background: var(--accent-line); } /* ----------------------------- job console ----------------------------- */ .job__head { display: flex; align-items: center; justify-content: space-between; gap: 12px; margin-bottom: 18px; } .state-tag { font-size: 0.74rem; font-weight: 700; text-transform: uppercase; letter-spacing: 0.06em; padding: 4px 12px; border-radius: 999px; color: var(--muted); background: var(--surface-2); border: 1px solid var(--border-2); } .state-tag.is-running { color: var(--accent); background: var(--accent-weak); border-color: var(--accent-line); } .state-tag.is-done { color: var(--ok); background: var(--accent-weak); border-color: var(--accent-line); } .state-tag.is-failed { color: var(--danger); background: var(--danger-weak); border-color: var(--danger-line); } /* copyable results link, prominent */ .joblink { margin: 0 0 18px; padding: 15px; border-radius: var(--r); background: var(--accent-weak); border: 1px solid var(--accent-line); } .joblink__label { display: block; font-size: 0.86rem; font-weight: 650; color: var(--text); margin-bottom: 9px; } .joblink__row { display: flex; gap: 8px; align-items: stretch; } .joblink__input { flex: 1 1 auto; min-width: 0; font-size: 0.84rem; color: var(--text); background: var(--surface); border: 1px solid var(--border-2); border-radius: 8px; padding: 9px 11px; } .joblink__input:focus { outline: none; border-color: var(--accent); box-shadow: var(--ring); } .joblink__note { margin: 10px 0 0; font-size: 0.82rem; color: var(--muted); line-height: 1.45; } .readout { display: grid; gap: 10px; margin: 0 0 18px; } .readout > div { display: flex; align-items: center; justify-content: space-between; gap: 12px; } .readout dt { font-size: 0.9rem; color: var(--muted); } .readout dd { margin: 0; font-size: 0.9rem; color: var(--text); overflow-wrap: anywhere; } .progress { margin-bottom: 18px; } .progress__track { height: 8px; border-radius: 999px; background: var(--surface-3); overflow: hidden; position: relative; } .progress__fill { display: block; height: 100%; width: 0%; border-radius: 999px; background: var(--accent); transition: width .3s ease; } .progress.is-indeterminate .progress__fill { width: 35%; animation: indeterminate 1.3s ease-in-out infinite; } @keyframes indeterminate { 0% { margin-left: -35%; } 100% { margin-left: 100%; } } .progress.is-done .progress__fill { width: 100% !important; margin-left: 0 !important; animation: none; } .progress__label { display: block; margin-top: 8px; font-size: 0.82rem; color: var(--muted); } .track { list-style: none; margin: 0 0 18px; padding: 0; display: flex; flex-direction: column; gap: 2px; } .track li { display: flex; align-items: center; gap: 12px; padding: 7px 0; font-size: 0.93rem; color: var(--faint); position: relative; } .track li::before { content: ""; position: absolute; left: 6px; top: 24px; bottom: -2px; width: 2px; background: var(--border-2); } .track li:last-child::before { display: none; } .track__dot { flex: none; width: 14px; height: 14px; border-radius: 50%; background: var(--surface); border: 2px solid var(--border-2); z-index: 1; } .track li.is-active { color: var(--text); font-weight: 600; } .track li.is-active .track__dot { border-color: var(--accent); background: var(--accent); box-shadow: 0 0 0 4px var(--accent-weak); } .track li.is-complete { color: var(--text-2); } .track li.is-complete .track__dot { border-color: var(--accent); background: var(--accent); } .track li.is-complete::before { background: var(--accent); } .track li.is-failed { color: var(--danger); font-weight: 600; } .track li.is-failed .track__dot { border-color: var(--danger); background: var(--danger); } .job-msg { font-size: 0.92rem; color: var(--muted); margin-bottom: 14px; } .job-msg:empty { display: none; } #job-result { display: flex; flex-direction: column; gap: 10px; } .job-failed__title { display: block; color: var(--danger); margin-bottom: 8px; font-size: 0.98rem; } .log { margin: 0; padding: 12px; max-height: 240px; overflow: auto; font-family: var(--font-mono); font-size: 0.8rem; line-height: 1.5; color: var(--text-2); background: var(--surface); border: 1px solid var(--border); border-radius: var(--r-sm); white-space: pre-wrap; word-break: break-word; } #reset { margin-top: 12px; } /* -------------------------------- footer ------------------------------- */ .colophon { border-top: 1px solid var(--border); padding: 22px 0; margin-top: auto; } .colophon__inner { display: flex; align-items: center; justify-content: space-between; gap: 12px 28px; flex-wrap: wrap; } .colophon__cite { font-size: 0.9rem; color: var(--text-2); } .colophon__meta { font-size: 0.86rem; color: var(--faint); } /* -------------------------- responsive polish -------------------------- */ @media (max-width: 640px) { .shell { padding-inline: 20px; } .panel { padding: 22px; border-radius: var(--r); } .adv__summary { padding: 22px; } .adv__body { padding: 0 22px 22px; } .intro { padding-top: 36px; } } /* -------------------------------- motion ------------------------------- */ @media (prefers-reduced-motion: reduce) { *, *::before, *::after { animation-duration: .001ms !important; transition-duration: .001ms !important; } }